7. Optimization, the central part of any Machine Learning algortithm#
Almost every problem in machine learning and data science starts with a dataset \(X\), a model \(g(\beta)\), which is a function of the parameters \(\beta\) and a cost function \(C(X, g(\beta))\) that allows us to judge how well the model \(g(\beta)\) explains the observations \(X\). The model is fit by finding the values of \(\beta\) that minimize the cost function. Ideally we would be able to solve for \(\beta\) analytically, however this is not possible in general and we must use some approximative/numerical method to compute the minimum.
In our discussion on Logistic Regression we studied the case of two classes, with \(y_i\) either \(0\) or \(1\). Furthermore we assumed also that we have only two parameters \(\beta\) in our fitting, that is we defined probabilities
where \(\boldsymbol{\beta}\) are the weights we wish to extract from data, in our case \(\beta_0\) and \(\beta_1\).
Our compact equations used a definition of a vector \(\boldsymbol{y}\) with \(n\) elements \(y_i\), an \(n\times p\) matrix \(\boldsymbol{X}\) which contains the \(x_i\) values and a vector \(\boldsymbol{p}\) of fitted probabilities \(p(y_i\vert x_i,\boldsymbol{\beta})\). We rewrote in a more compact form the first derivative of the cost function as
If we in addition define a diagonal matrix \(\boldsymbol{W}\) with elements \(p(y_i\vert x_i,\boldsymbol{\beta})(1-p(y_i\vert x_i,\boldsymbol{\beta})\), we can obtain a compact expression of the second derivative as
This defines what is called the Hessian matrix.
If we can set up these equations, Newton-Raphson’s iterative method is normally the method of choice. It requires however that we can compute in an efficient way the matrices that define the first and second derivatives.
Our iterative scheme is then given by
or in matrix form as
The right-hand side is computed with the old values of \(\beta\).
If we can compute these matrices, in particular the Hessian, the above is often the easiest method to implement.
Let us quickly remind ourselves how we derive the above method.
Perhaps the most celebrated of all one-dimensional root-finding routines is Newton’s method, also called the Newton-Raphson method. This method requires the evaluation of both the function \(f\) and its derivative \(f'\) at arbitrary points. If you can only calculate the derivative numerically and/or your function is not of the smooth type, we normally discourage the use of this method.
The Newton-Raphson formula consists geometrically of extending the tangent line at a current point until it crosses zero, then setting the next guess to the abscissa of that zero-crossing. The mathematics behind this method is rather simple. Employing a Taylor expansion for \(x\) sufficiently close to the solution \(s\), we have
For small enough values of the function and for well-behaved functions, the terms beyond linear are unimportant, hence we obtain
yielding
Having in mind an iterative procedure, it is natural to start iterating with
The above is Newton-Raphson’s method. It has a simple geometric interpretation, namely \(x_{n+1}\) is the point where the tangent from \((x_n,f(x_n))\) crosses the \(x\)-axis. Close to the solution, Newton-Raphson converges fast to the desired result. However, if we are far from a root, where the higher-order terms in the series are important, the Newton-Raphson formula can give grossly inaccurate results. For instance, the initial guess for the root might be so far from the true root as to let the search interval include a local maximum or minimum of the function. If an iteration places a trial guess near such a local extremum, so that the first derivative nearly vanishes, then Newton-Raphson may fail totally
Newton’s method can be generalized to systems of several non-linear equations and variables. Consider the case with two equations
which we Taylor expand to obtain
Defining the Jacobian matrix \(\boldsymbol{J}\) we have
we can rephrase Newton’s method as
where we have defined
We need thus to compute the inverse of the Jacobian matrix and it is to understand that difficulties may arise in case \(\boldsymbol{J}\) is nearly singular.
It is rather straightforward to extend the above scheme to systems of more than two non-linear equations. In our case, the Jacobian matrix is given by the Hessian that represents the second derivative of cost function.
7.1. Steepest descent#
The basic idea of gradient descent is that a function \(F(\mathbf{x})\), \(\mathbf{x} \equiv (x_1,\cdots,x_n)\), decreases fastest if one goes from \(\bf {x}\) in the direction of the negative gradient \(-\nabla F(\mathbf{x})\).
It can be shown that if
with \(\gamma_k > 0\).
For \(\gamma_k\) small enough, then \(F(\mathbf{x}_{k+1}) \leq F(\mathbf{x}_k)\). This means that for a sufficiently small \(\gamma_k\) we are always moving towards smaller function values, i.e a minimum.
The previous observation is the basis of the method of steepest descent, which is also referred to as just gradient descent (GD). One starts with an initial guess \(\mathbf{x}_0\) for a minimum of \(F\) and computes new approximations according to
The parameter \(\gamma_k\) is often referred to as the step length or the learning rate within the context of Machine Learning.
Ideally the sequence \(\{\mathbf{x}_k \}_{k=0}\) converges to a global minimum of the function \(F\). In general we do not know if we are in a global or local minimum. In the special case when \(F\) is a convex function, all local minima are also global minima, so in this case gradient descent can converge to the global solution. The advantage of this scheme is that it is conceptually simple and straightforward to implement. However the method in this form has some severe limitations:
In machine learing we are often faced with non-convex high dimensional cost functions with many local minima. Since GD is deterministic we will get stuck in a local minimum, if the method converges, unless we have a very good intial guess. This also implies that the scheme is sensitive to the chosen initial condition.
Note that the gradient is a function of \(\mathbf{x} = (x_1,\cdots,x_n)\) which makes it expensive to compute numerically.
The gradient descent method is sensitive to the choice of learning rate \(\gamma_k\). This is due to the fact that we are only guaranteed that \(F(\mathbf{x}_{k+1}) \leq F(\mathbf{x}_k)\) for sufficiently small \(\gamma_k\). The problem is to determine an optimal learning rate. If the learning rate is chosen too small the method will take a long time to converge and if it is too large we can experience erratic behavior.
Many of these shortcomings can be alleviated by introducing randomness. One such method is that of Stochastic Gradient Descent (SGD), see below.
7.2. Convex functions#
Ideally we want our cost/loss function to be convex(concave).
First we give the definition of a convex set: A set \(C\) in \(\mathbb{R}^n\) is said to be convex if, for all \(x\) and \(y\) in \(C\) and all \(t \in (0,1)\) , the point \((1 − t)x + ty\) also belongs to C. Geometrically this means that every point on the line segment connecting \(x\) and \(y\) is in \(C\) as discussed below.
The convex subsets of \(\mathbb{R}\) are the intervals of \(\mathbb{R}\). Examples of convex sets of \(\mathbb{R}^2\) are the regular polygons (triangles, rectangles, pentagons, etc…).
Convex function: Let \(X \subset \mathbb{R}^n\) be a convex set. Assume that the function \(f: X \rightarrow \mathbb{R}\) is continuous, then \(f\) is said to be convex if \(f(tx_1 + (1-t)x_2) \leq tf(x_1) + (1-t)f(x_2)\) for all \(x_1, x_2 \in X\) and for all \(t \in [0,1]\).
If \(\leq\) is replaced with a strict inequality in the definition, we demand \(x_1 \neq x_2\) and \(t\in(0,1)\) then \(f\) is said to be strictly convex. For a single variable function, convexity means that if you draw a straight line connecting \(f(x_1)\) and \(f(x_2)\), the value of the function on the interval \([x_1,x_2]\) is always below the line as discussed below.
In the following we state first and second-order conditions which ensures convexity of a function \(f\). We write \(D_f\) to denote the domain of \(f\), i.e the subset of \(R^n\) where \(f\) is defined. For more details and proofs we refer to: [S. Boyd and L. Vandenberghe. Convex Optimization. Cambridge University Press](http://stanford.edu/boyd/cvxbook/, 2004).
First order condition: Suppose \(f\) is differentiable (i.e \(\nabla f(x)\) is well defined for all \(x\) in the domain of \(f\)). Then \(f\) is convex if and only if \(D_f\) is a convex set and \(f(y) \geq f(x) + \nabla f(x)^T (y-x)\) holds for all \(x,y \in D_f\). This condition means that for a convex function the first order Taylor expansion (right hand side above) at any point is a global under estimator of the function. To convince yourself you can make a drawing of \(f(x) = x^2+1\) and draw the tangent line to \(f(x)\) and note that it is always below the graph.
Second order condition: Assume that \(f\) is twice differentiable, i.e the Hessian matrix exists at each point in \(D_f\). Then \(f\) is convex if and only if \(D_f\) is a convex set and its Hessian is positive semi-definite for all \(x\in D_f\). For a single-variable function this reduces to \(f''(x) \geq 0\). Geometrically this means that \(f\) has nonnegative curvature everywhere.
This condition is particularly useful since it gives us an procedure for determining if the function under consideration is convex, apart from using the definition.
The next result is of great importance to us and the reason why we are going on about convex functions. In machine learning we frequently have to minimize a loss/cost function in order to find the best parameters for the model we are considering.
Ideally we want the global minimum (for high-dimensional models it is hard to know if we have local or global minimum). However, if the cost/loss function is convex the following result provides invaluable information:
Any minimum is global for convex functions.
Consider the problem of finding \(x \in \mathbb{R}^n\) such that \(f(x)\) is minimal, where \(f\) is convex and differentiable. Then, any point \(x^*\) that satisfies \(\nabla f(x^*) = 0\) is a global minimum.
This result means that if we know that the cost/loss function is convex and we are able to find a minimum, we are guaranteed that it is a global minimum.
7.2.1. Some simple problems#
Show that \(f(x)=x^2\) is convex for \(x \in \mathbb{R}\) using the definition of convexity. Hint: If you re-write the definition, \(f\) is convex if the following holds for all \(x,y \in D_f\) and any \(\lambda \in [0,1]\) \(\lambda f(x)+(1-\lambda)f(y)-f(\lambda x + (1-\lambda) y ) \geq 0\).
Using the second order condition show that the following functions are convex on the specified domain.
\(f(x) = e^x\) is convex for \(x \in \mathbb{R}\).
\(g(x) = -\ln(x)\) is convex for \(x \in (0,\infty)\).
Let \(f(x) = x^2\) and \(g(x) = e^x\). Show that \(f(g(x))\) and \(g(f(x))\) is convex for \(x \in \mathbb{R}\). Also show that if \(f(x)\) is any convex function than \(h(x) = e^{f(x)}\) is convex.
A norm is any function that satisfy the following properties
\(f(\alpha x) = |\alpha| f(x)\) for all \(\alpha \in \mathbb{R}\).
\(f(x+y) \leq f(x) + f(y)\)
\(f(x) \leq 0\) for all \(x \in \mathbb{R}^n\) with equality if and only if \(x = 0\)
Using the definition of convexity, try to show that a function satisfying the properties above is convex (the third condition is not needed to show this).
7.3. Standard steepest descent#
Before we proceed, we would like to discuss the approach called the standard Steepest descent (different from the above steepest descent discussion), which again leads to us having to be able to compute a matrix. It belongs to the class of Conjugate Gradient methods (CG).
The success of the CG method for finding solutions of non-linear problems is based on the theory of conjugate gradients for linear systems of equations. It belongs to the class of iterative methods for solving problems from linear algebra of the type
In the iterative process we end up with a problem like
where \(\boldsymbol{r}\) is the so-called residual or error in the iterative process.
When we have found the exact solution, \(\boldsymbol{r}=0\).
The residual is zero when we reach the minimum of the quadratic equation
with the constraint that the matrix \(\boldsymbol{A}\) is positive definite and symmetric. This defines also the Hessian and we want it to be positive definite.
We denote the initial guess for \(\boldsymbol{x}\) as \(\boldsymbol{x}_0\). We can assume without loss of generality that
or consider the system
instead.
One can show that the solution \(\boldsymbol{x}\) is also the unique minimizer of the quadratic form
This suggests taking the first basis vector \(\boldsymbol{r}_1\) (see below for definition) to be the gradient of \(f\) at \(\boldsymbol{x}=\boldsymbol{x}_0\), which equals
and \(\boldsymbol{x}_0=0\) it is equal \(-\boldsymbol{b}\).
We can compute the residual iteratively as
which equals
or
which gives
leading to the iterative scheme
%matplotlib inline
import numpy as np
import numpy.linalg as la
import scipy.optimize as sopt
import matplotlib.pyplot as pt
from mpl_toolkits.mplot3d import axes3d
def f(x):
return 0.5*x[0]**2 + 2.5*x[1]**2
def df(x):
return np.array([x[0], 5*x[1]])
fig = pt.figure()
ax = fig.gca(projection="3d")
xmesh, ymesh = np.mgrid[-2:2:50j,-2:2:50j]
fmesh = f(np.array([xmesh, ymesh]))
ax.plot_surface(xmesh, ymesh, fmesh)
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
Cell In[1], line 18
15 return np.array([x[0], 5*x[1]])
17 fig = pt.figure()
---> 18 ax = fig.gca(projection="3d")
20 xmesh, ymesh = np.mgrid[-2:2:50j,-2:2:50j]
21 fmesh = f(np.array([xmesh, ymesh]))
TypeError: gca() got an unexpected keyword argument 'projection'
<Figure size 640x480 with 0 Axes>
And then as countor plot
pt.axis("equal")
pt.contour(xmesh, ymesh, fmesh)
guesses = [np.array([2, 2./5])]
Find guesses
x = guesses[-1]
s = -df(x)
Run it!
def f1d(alpha):
return f(x + alpha*s)
alpha_opt = sopt.golden(f1d)
next_guess = x + alpha_opt * s
guesses.append(next_guess)
print(next_guess)
What happened?
pt.axis("equal")
pt.contour(xmesh, ymesh, fmesh, 50)
it_array = np.array(guesses)
pt.plot(it_array.T[0], it_array.T[1], "x-")
7.4. Conjugate gradient method#
In the CG method we define so-called conjugate directions and two vectors \(\boldsymbol{s}\) and \(\boldsymbol{t}\) are said to be conjugate if
The philosophy of the CG method is to perform searches in various conjugate directions of our vectors \(\boldsymbol{x}_i\) obeying the above criterion, namely
Two vectors are conjugate if they are orthogonal with respect to this inner product. Being conjugate is a symmetric relation: if \(\boldsymbol{s}\) is conjugate to \(\boldsymbol{t}\), then \(\boldsymbol{t}\) is conjugate to \(\boldsymbol{s}\).
An example is given by the eigenvectors of the matrix
which is zero unless \(i=j\).
Assume now that we have a symmetric positive-definite matrix \(\boldsymbol{A}\) of size \(n\times n\). At each iteration \(i+1\) we obtain the conjugate direction of a vector
We assume that \(\boldsymbol{p}_{i}\) is a sequence of \(n\) mutually conjugate directions. Then the \(\boldsymbol{p}_{i}\) form a basis of \(R^n\) and we can expand the solution \( \boldsymbol{A}\boldsymbol{x} = \boldsymbol{b}\) in this basis, namely
The coefficients are given by
Multiplying with \(\boldsymbol{p}_k^T\) from the left gives
and we can define the coefficients \(\alpha_k\) as
If we choose the conjugate vectors \(\boldsymbol{p}_k\) carefully, then we may not need all of them to obtain a good approximation to the solution \(\boldsymbol{x}\). We want to regard the conjugate gradient method as an iterative method. This will us to solve systems where \(n\) is so large that the direct method would take too much time.
We denote the initial guess for \(\boldsymbol{x}\) as \(\boldsymbol{x}_0\). We can assume without loss of generality that
or consider the system
instead.
One can show that the solution \(\boldsymbol{x}\) is also the unique minimizer of the quadratic form
This suggests taking the first basis vector \(\boldsymbol{p}_1\) to be the gradient of \(f\) at \(\boldsymbol{x}=\boldsymbol{x}_0\), which equals
and \(\boldsymbol{x}_0=0\) it is equal \(-\boldsymbol{b}\). The other vectors in the basis will be conjugate to the gradient, hence the name conjugate gradient method.
Let \(\boldsymbol{r}_k\) be the residual at the \(k\)-th step:
Note that \(\boldsymbol{r}_k\) is the negative gradient of \(f\) at
\(\boldsymbol{x}=\boldsymbol{x}_k\),
so the gradient descent method would be to move in the direction \(\boldsymbol{r}_k\).
Here, we insist that the directions \(\boldsymbol{p}_k\) are conjugate to each other,
so we take the direction closest to the gradient \(\boldsymbol{r}_k\)
under the conjugacy constraint.
This gives the following expression
We can also compute the residual iteratively as
which equals
or
which gives
7.5. Revisiting our Linear Regression Solvers#
We will use linear regression as a case study for the gradient descent methods. Linear regression is a great test case for the gradient descent methods discussed in the lectures since it has several desirable properties such as:
An analytical solution.
The gradient can be computed analytically.
The cost function is convex which guarantees that gradient descent converges for small enough learning rates
We revisit an example similar to what we had in the first homework set. We had a function of the type
m = 100
x = 2*np.random.rand(m,1)
y = 4+3*x+np.random.randn(m,1)
with \(x_i \in [0,1] \) is chosen randomly using a uniform distribution. Additionally we have a stochastic noise chosen according to a normal distribution \(\cal {N}(0,1)\). The linear regression model is given by
such that
Let \(\mathbf{y} = (y_1,\cdots,y_n)^T\), \(\mathbf{\boldsymbol{y}} = (\boldsymbol{y}_1,\cdots,\boldsymbol{y}_n)^T\) and \(\beta = (\beta_0, \beta_1)^T\)
It is convenient to write \(\mathbf{\boldsymbol{y}} = X\beta\) where \(X \in \mathbb{R}^{100 \times 2} \) is the design matrix given by (we keep the intercept here)
The cost/loss/risk function is given by (
and we want to find \(\beta\) such that \(C(\beta)\) is minimized.
Computing \(\partial C(\beta) / \partial \beta_0\) and \(\partial C(\beta) / \partial \beta_1\) we can show that the gradient can be written as
where \(X\) is the design matrix defined above.
The Hessian matrix of \(C(\beta)\) is given by
This result implies that \(C(\beta)\) is a convex function since the matrix \(X^T X\) always is positive semi-definite.
We can now write a program that minimizes \(C(\beta)\) using the gradient descent method with a constant learning rate \(\gamma\) according to
We can use the expression we computed for the gradient and let use a \(\beta_0\) be chosen randomly and let \(\gamma = 0.001\). Stop iterating when \(||\nabla_\beta C(\beta_k) || \leq \epsilon = 10^{-8}\). Note that the code below does not include the latter stop criterion.
And finally we can compare our solution for \(\beta\) with the analytic result given by \(\beta= (X^TX)^{-1} X^T \mathbf{y}\).
Here is our simple example
# Importing various packages
from random import random, seed
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from matplotlib import cm
from matplotlib.ticker import LinearLocator, FormatStrFormatter
import sys
# the number of datapoints
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
# Hessian matrix
H = (2.0/n)* X.T @ X
# Get the eigenvalues
EigValues, EigVectors = np.linalg.eig(H)
print(EigValues)
beta_linreg = np.linalg.inv(X.T @ X) @ X.T @ y
print(beta_linreg)
beta = np.random.randn(2,1)
eta = 1.0/np.max(EigValues)
Niterations = 1000
for iter in range(Niterations):
gradient = (2.0/n)*X.T @ (X @ beta-y)
beta -= eta*gradient
print(beta)
xnew = np.array([[0],[2]])
xbnew = np.c_[np.ones((2,1)), xnew]
ypredict = xbnew.dot(beta)
ypredict2 = xbnew.dot(beta_linreg)
plt.plot(xnew, ypredict, "r-")
plt.plot(xnew, ypredict2, "b-")
plt.plot(x, y ,'ro')
plt.axis([0,2.0,0, 15.0])
plt.xlabel(r'$x$')
plt.ylabel(r'$y$')
plt.title(r'Gradient descent example')
plt.show()
Alternatively, we can use Scikit-Learn as done here
# Importing various packages
from random import random, seed
import numpy as np
import matplotlib.pyplot as plt
from sklearn.linear_model import SGDRegressor
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
beta_linreg = np.linalg.inv(X.T @ X) @ (X.T @ y)
print(beta_linreg)
sgdreg = SGDRegressor(max_iter = 50, penalty=None, eta0=0.1)
sgdreg.fit(x,y.ravel())
print(sgdreg.intercept_, sgdreg.coef_)
We have also discussed Ridge regression where the loss function contains a regularized term given by the \(L_2\) norm of \(\beta\),
In order to minimize \(C_{\text{ridge}}(\beta)\) using GD we only have adjust the gradient as follows
We can easily extend our program to minimize \(C_{\text{ridge}}(\beta)\) using gradient descent and compare with the analytical solution given by
from random import random, seed
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from matplotlib import cm
from matplotlib.ticker import LinearLocator, FormatStrFormatter
import sys
# the number of datapoints
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
#Ridge parameter lambda
lmbda = 0.001
Id = lmbda* np.eye(XT_X.shape[0])
beta_linreg = np.linalg.inv(XT_X+Id) @ X.T @ y
print(beta_linreg)
# Start plain gradient descent
beta = np.random.randn(2,1)
eta = 0.1
Niterations = 100
for iter in range(Niterations):
gradients = 2.0/n*X.T @ (X @ (beta)-y)+2*lmbda*beta
beta -= eta*gradients
print(beta)
ypredict = X @ beta
ypredict2 = X @ beta_linreg
plt.plot(x, ypredict, "r-")
plt.plot(x, ypredict2, "b-")
plt.plot(x, y ,'ro')
plt.axis([0,2.0,0, 15.0])
plt.xlabel(r'$x$')
plt.ylabel(r'$y$')
plt.title(r'Gradient descent example for Ridge')
plt.show()
7.6. Using gradient descent methods, limitations#
Gradient descent (GD) finds local minima of our function. Since the GD algorithm is deterministic, if it converges, it will converge to a local minimum of our cost/loss/risk function. Because in ML we are often dealing with extremely rugged landscapes with many local minima, this can lead to poor performance.
GD is sensitive to initial conditions. One consequence of the local nature of GD is that initial conditions matter. Depending on where one starts, one will end up at a different local minima. Therefore, it is very important to think about how one initializes the training process. This is true for GD as well as more complicated variants of GD.
Gradients are computationally expensive to calculate for large datasets. In many cases in statistics and ML, the cost/loss/risk function is a sum of terms, with one term for each data point. For example, in linear regression, \(E \propto \sum_{i=1}^n (y_i - \mathbf{w}^T\cdot\mathbf{x}_i)^2\); for logistic regression, the square error is replaced by the cross entropy. To calculate the gradient we have to sum over all \(n\) data points. Doing this at every GD step becomes extremely computationally expensive. An ingenious solution to this, is to calculate the gradients using small subsets of the data called “mini batches”. This has the added benefit of introducing stochasticity into our algorithm.
GD is very sensitive to choices of learning rates. GD is extremely sensitive to the choice of learning rates. If the learning rate is very small, the training process take an extremely long time. For larger learning rates, GD can diverge and give poor results. Furthermore, depending on what the local landscape looks like, we have to modify the learning rates to ensure convergence. Ideally, we would adaptively choose the learning rates to match the landscape.
GD treats all directions in parameter space uniformly. Another major drawback of GD is that unlike Newton’s method, the learning rate for GD is the same in all directions in parameter space. For this reason, the maximum learning rate is set by the behavior of the steepest direction and this can significantly slow down training. Ideally, we would like to take large steps in flat directions and small steps in steep directions. Since we are exploring rugged landscapes where curvatures change, this requires us to keep track of not only the gradient but second derivatives. The ideal scenario would be to calculate the Hessian but this proves to be too computationally expensive.
GD can take exponential time to escape saddle points, even with random initialization. As we mentioned, GD is extremely sensitive to initial condition since it determines the particular local minimum GD would eventually reach. However, even with a good initialization scheme, through the introduction of randomness, GD can still take exponential time to escape saddle points.
7.7. Stochastic Gradient Descent (SGD)#
In stochastic gradient descent, the extreme case is the case where we have only one batch, that is we include the whole data set.
This process is called Stochastic Gradient Descent (SGD) (or also sometimes on-line gradient descent). This is relatively less common to see because in practice due to vectorized code optimizations it can be computationally much more efficient to evaluate the gradient for 100 examples, than the gradient for one example 100 times. Even though SGD technically refers to using a single example at a time to evaluate the gradient, you will hear people use the term SGD even when referring to mini-batch gradient descent (i.e. mentions of MGD for “Minibatch Gradient Descent”, or BGD for “Batch gradient descent” are rare to see), where it is usually assumed that mini-batches are used. The size of the mini-batch is a hyperparameter but it is not very common to cross-validate or bootstrap it. It is usually based on memory constraints (if any), or set to some value, e.g. 32, 64 or 128. We use powers of 2 in practice because many vectorized operation implementations work faster when their inputs are sized in powers of 2.
In our notes with SGD we mean stochastic gradient descent with mini-batches.
Stochastic gradient descent (SGD) and variants thereof address some of the shortcomings of the Gradient descent method discussed above.
The underlying idea of SGD comes from the observation that the cost function, which we want to minimize, can almost always be written as a sum over \(n\) data points \(\{\mathbf{x}_i\}_{i=1}^n\),
This in turn means that the gradient can be computed as a sum over \(i\)-gradients
Stochasticity/randomness is introduced by only taking the gradient on a subset of the data called minibatches. If there are \(n\) data points and the size of each minibatch is \(M\), there will be \(n/M\) minibatches. We denote these minibatches by \(B_k\) where \(k=1,\cdots,n/M\).
As an example, suppose we have \(10\) data points \((\mathbf{x}_1,\cdots, \mathbf{x}_{10})\) and we choose to have \(M=5\) minibathces, then each minibatch contains two data points. In particular we have \(B_1 = (\mathbf{x}_1,\mathbf{x}_2), \cdots, B_5 = (\mathbf{x}_9,\mathbf{x}_{10})\). Note that if you choose \(M=1\) you have only a single batch with all data points and on the other extreme, you may choose \(M=n\) resulting in a minibatch for each datapoint, i.e \(B_k = \mathbf{x}_k\).
The idea is now to approximate the gradient by replacing the sum over all data points with a sum over the data points in one the minibatches picked at random in each gradient descent step
Thus a gradient descent step now looks like
where \(k\) is picked at random with equal probability from \([1,n/M]\). An iteration over the number of minibathces (n/M) is commonly referred to as an epoch. Thus it is typical to choose a number of epochs and for each epoch iterate over the number of minibatches, as exemplified in the code below.
import numpy as np
n = 100 #100 datapoints
M = 5 #size of each mini-batche
m = int(n/M) #number of minibatches
n_epochs = 10 #number of epochs
j = 0
for epoch in range(1,n_epochs+1):
for i in range(m):
k = np.random.randint(m) #Pick the k-th minibatch at random
#Compute the gradient using the data in minibatch Bk
#Compute new suggestion for
j += 1
Taking the gradient only on a subset of the data has two important benefits. First, it introduces randomness which decreases the chance that our opmization scheme gets stuck in a local minima. Second, if the size of the minibatches are small relative to the number of datapoints (\(M < n\)), the computation of the gradient is much cheaper since we sum over the datapoints in the \(k-th\) minibatch and not all \(n\) datapoints.
A natural question is when do we stop the search for a new minimum? One possibility is to compute the full gradient after a given number of epochs and check if the norm of the gradient is smaller than some threshold and stop if true. However, the condition that the gradient is zero is valid also for local minima, so this would only tell us that we are close to a local/global minimum. However, we could also evaluate the cost function at this point, store the result and continue the search. If the test kicks in at a later stage we can compare the values of the cost function and keep the \(\beta\) that gave the lowest value.
Another approach is to let the step length \(\gamma_j\) depend on the number of epochs in such a way that it becomes very small after a reasonable time such that we do not move at all.
As an example, let \(e = 0,1,2,3,\cdots\) denote the current epoch and let \(t_0, t_1 > 0\) be two fixed numbers. Furthermore, let \(t = e \cdot m + i\) where \(m\) is the number of minibatches and \(i=0,\cdots,m-1\). Then the function $\(\gamma_j(t; t_0, t_1) = \frac{t_0}{t+t_1} \)\( goes to zero as the number of epochs gets large. I.e. we start with a step length \)\gamma_j (0; t_0, t_1) = t_0/t_1\( which decays in *time* \)t$.
In this way we can fix the number of epochs, compute \(\beta\) and evaluate the cost function at the end. Repeating the computation will give a different result since the scheme is random by design. Then we pick the final \(\beta\) that gives the lowest value of the cost function.
import numpy as np
def step_length(t,t0,t1):
return t0/(t+t1)
n = 100 #100 datapoints
M = 5 #size of each minibatch
m = int(n/M) #number of minibatches
n_epochs = 500 #number of epochs
t0 = 1.0
t1 = 10
gamma_j = t0/t1
j = 0
for epoch in range(1,n_epochs+1):
for i in range(m):
k = np.random.randint(m) #Pick the k-th minibatch at random
#Compute the gradient using the data in minibatch Bk
#Compute new suggestion for beta
t = epoch*m+i
gamma_j = step_length(t,t0,t1)
j += 1
print("gamma_j after %d epochs: %g" % (n_epochs,gamma_j))
We note that we have defined several hyperparameters. These are now the number of epochs, the number of mini-batches and the parameters \(t_0\) and \(t_1\).
7.7.1. Program for stochastic gradient#
# Importing various packages
# Importing various packages
from math import exp, sqrt
from random import random, seed
import numpy as np
import matplotlib.pyplot as plt
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
theta_linreg = np.linalg.inv(X.T @ X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Hessian matrix
H = (2.0/n)* XT_X
EigValues, EigVectors = np.linalg.eig(H)
print(f"Eigenvalues of Hessian Matrix:{EigValues}")
theta = np.random.randn(2,1)
eta = 1.0/np.max(EigValues)
Niterations = 1000
for iter in range(Niterations):
gradients = 2.0/n*X.T @ ((X @ theta)-y)
theta -= eta*gradients
print("theta from own gd")
print(theta)
xnew = np.array([[0],[2]])
Xnew = np.c_[np.ones((2,1)), xnew]
ypredict = Xnew.dot(theta)
ypredict2 = Xnew.dot(theta_linreg)
n_epochs = 50
M = 5 #size of each minibatch
m = int(n/M) #number of minibatches
t0, t1 = 5, 50
def learning_schedule(t):
return t0/(t+t1)
theta = np.random.randn(2,1)
for epoch in range(n_epochs):
# Can you figure out a better way of setting up the contributions to each batch?
for i in range(m):
random_index = M*np.random.randint(m)
xi = X[random_index:random_index+M]
yi = y[random_index:random_index+M]
gradients = (2.0/M)* xi.T @ ((xi @ theta)-yi)
eta = learning_schedule(epoch*m+i)
theta = theta - eta*gradients
print("theta from own sdg")
print(theta)
plt.plot(xnew, ypredict, "r-")
plt.plot(xnew, ypredict2, "b-")
plt.plot(x, y ,'ro')
plt.axis([0,2.0,0, 15.0])
plt.xlabel(r'$x$')
plt.ylabel(r'$y$')
plt.title(r'Random numbers ')
plt.show()
In the above code, we have use replacement in setting up the mini-batches. The discussion here may be useful. More material will be added later.
7.8. Momentum based GD#
The stochastic gradient descent (SGD) is almost always used with a momentum or inertia term that serves as a memory of the direction we are moving in parameter space. This is typically implemented as follows
where we have introduced a momentum parameter \(\gamma\), with \(0\le\gamma\le 1\), and for brevity we dropped the explicit notation to indicate the gradient is to be taken over a different mini-batch at each step. We call this algorithm gradient descent with momentum (GDM). From these equations, it is clear that \(\mathbf{v}_t\) is a running average of recently encountered gradients and \((1-\gamma)^{-1}\) sets the characteristic time scale for the memory used in the averaging procedure. Consistent with this, when \(\gamma=0\), this just reduces down to ordinary SGD as discussed earlier. An equivalent way of writing the updates is
where we have defined \(\Delta \boldsymbol{\theta}_{t}= \boldsymbol{\theta}_t-\boldsymbol{\theta}_{t-1}\).
Let us try to get more intuition from these equations. It is helpful to consider a simple physical analogy with a particle of mass \(m\) moving in a viscous medium with drag coefficient \(\mu\) and potential \(E(\mathbf{w})\). If we denote the particle’s position by \(\mathbf{w}\), then its motion is described by
We can discretize this equation in the usual way to get
Rearranging this equation, we can rewrite this as
Notice that this equation is identical to previous one if we identify the position of the particle, \(\mathbf{w}\), with the parameters \(\boldsymbol{\theta}\). This allows us to identify the momentum parameter and learning rate with the mass of the particle and the viscous drag as:
Thus, as the name suggests, the momentum parameter is proportional to the mass of the particle and effectively provides inertia. Furthermore, in the large viscosity/small learning rate limit, our memory time scales as \((1-\gamma)^{-1} \approx m/(\mu \Delta t)\).
Why is momentum useful? SGD momentum helps the gradient descent algorithm gain speed in directions with persistent but small gradients even in the presence of stochasticity, while suppressing oscillations in high-curvature directions. This becomes especially important in situations where the landscape is shallow and flat in some directions and narrow and steep in others. It has been argued that first-order methods (with appropriate initial conditions) can perform comparable to more expensive second order methods, especially in the context of complex deep learning models.
These beneficial properties of momentum can sometimes become even more pronounced by using a slight modification of the classical momentum algorithm called Nesterov Accelerated Gradient (NAG).
In the NAG algorithm, rather than calculating the gradient at the current parameters, \(\nabla_\theta E(\boldsymbol{\theta}_t)\), one calculates the gradient at the expected value of the parameters given our current momentum, \(\nabla_\theta E(\boldsymbol{\theta}_t +\gamma \mathbf{v}_{t-1})\). This yields the NAG update rule
One of the major advantages of NAG is that it allows for the use of a larger learning rate than GDM for the same choice of \(\gamma\).
In stochastic gradient descent, with and without momentum, we still have to specify a schedule for tuning the learning rates \(\eta_t\) as a function of time. As discussed in the context of Newton’s method, this presents a number of dilemmas. The learning rate is limited by the steepest direction which can change depending on the current position in the landscape. To circumvent this problem, ideally our algorithm would keep track of curvature and take large steps in shallow, flat directions and small steps in steep, narrow directions. Second-order methods accomplish this by calculating or approximating the Hessian and normalizing the learning rate by the curvature. However, this is very computationally expensive for extremely large models. Ideally, we would like to be able to adaptively change the step size to match the landscape without paying the steep computational price of calculating or approximating Hessians.
Recently, a number of methods have been introduced that accomplish this by tracking not only the gradient, but also the second moment of the gradient. These methods include AdaGrad, AdaDelta, Root Mean Squared Propagation (RMS-Prop), and ADAM.
7.8.1. RMS prop#
In RMS prop, in addition to keeping a running average of the first moment of the gradient, we also keep track of the second moment denoted by \(\mathbf{s}_t=\mathbb{E}[\mathbf{g}_t^2]\). The update rule for RMS prop is given by
where \(\beta\) controls the averaging time of the second moment and is typically taken to be about \(\beta=0.9\), \(\eta_t\) is a learning rate typically chosen to be \(10^{-3}\), and \(\epsilon\sim 10^{-8} \) is a small regularization constant to prevent divergences. Multiplication and division by vectors is understood as an element-wise operation. It is clear from this formula that the learning rate is reduced in directions where the norm of the gradient is consistently large. This greatly speeds up the convergence by allowing us to use a larger learning rate for flat directions.
7.8.2. ADAM optimizer#
A related algorithm is the ADAM optimizer. In ADAM, we keep a running average of both the first and second moment of the gradient and use this information to adaptively change the learning rate for different parameters. In addition to keeping a running average of the first and second moments of the gradient (i.e. \(\mathbf{m}_t=\mathbb{E}[\mathbf{g}_t]\) and \(\mathbf{s}_t=\mathbb{E}[\mathbf{g}^2_t]\), respectively), ADAM performs an additional bias correction to account for the fact that we are estimating the first two moments of the gradient using a running average (denoted by the hats in the update rule below). The update rule for ADAM is given by (where multiplication and division are once again understood to be element-wise operations below)
where \(\beta_1\) and \(\beta_2\) set the memory lifetime of the first and second moment and are typically taken to be \(0.9\) and \(0.99\) respectively, and \(\eta\) and \(\epsilon\) are identical to RMSprop.
Like in RMSprop, the effective step size of a parameter depends on the magnitude of its gradient squared. To understand this better, let us rewrite this expression in terms of the variance \(\boldsymbol{\sigma}_t^2 = \boldsymbol{\mathbf{s}}_t - (\boldsymbol{\mathbf{m}}_t)^2\). Consider a single parameter \(\theta_t\). The update rule for this parameter is given by
7.9. Practical tips#
Randomize the data when making mini-batches. It is always important to randomly shuffle the data when forming mini-batches. Otherwise, the gradient descent method can fit spurious correlations resulting from the order in which data is presented.
Transform your inputs. Learning becomes difficult when our landscape has a mixture of steep and flat directions. One simple trick for minimizing these situations is to standardize the data by subtracting the mean and normalizing the variance of input variables. Whenever possible, also decorrelate the inputs. To understand why this is helpful, consider the case of linear regression. It is easy to show that for the squared error cost function, the Hessian of the cost function is just the correlation matrix between the inputs. Thus, by standardizing the inputs, we are ensuring that the landscape looks homogeneous in all directions in parameter space. Since most deep networks can be viewed as linear transformations followed by a non-linearity at each layer, we expect this intuition to hold beyond the linear case.
Monitor the out-of-sample performance. Always monitor the performance of your model on a validation set (a small portion of the training data that is held out of the training process to serve as a proxy for the test set. If the validation error starts increasing, then the model is beginning to overfit. Terminate the learning process. This early stopping significantly improves performance in many settings.
Adaptive optimization methods don’t always have good generalization. Recent studies have shown that adaptive methods such as ADAM, RMSPorp, and AdaGrad tend to have poor generalization compared to SGD or SGD with momentum, particularly in the high-dimensional limit (i.e. the number of parameters exceeds the number of data points). Although it is not clear at this stage why these methods perform so well in training deep neural networks, simpler procedures like properly-tuned SGD may work as well or better in these applications.
7.10. Automatic differentiation#
Automatic differentiation (AD), also called algorithmic differentiation or computational differentiation,is a set of techniques to numerically evaluate the derivative of a function specified by a computer program. AD exploits the fact that every computer program, no matter how complicated, executes a sequence of elementary arithmetic operations (addition, subtraction, multiplication, division, etc.) and elementary functions (exp, log, sin, cos, etc.). By applying the chain rule repeatedly to these operations, derivatives of arbitrary order can be computed automatically, accurately to working precision, and using at most a small constant factor more arithmetic operations than the original program.
Automatic differentiation is neither:
Symbolic differentiation, nor
Numerical differentiation (the method of finite differences).
Symbolic differentiation can lead to inefficient code and faces the difficulty of converting a computer program into a single expression, while numerical differentiation can introduce round-off errors in the discretization process and cancellation
Python has tools for so-called automatic differentiation. Consider the following example
which has the following derivative
Using autograd we have
import autograd.numpy as np
# To do elementwise differentiation:
from autograd import elementwise_grad as egrad
# To plot:
import matplotlib.pyplot as plt
def f(x):
return np.sin(2*np.pi*x + x**2)
def f_grad_analytic(x):
return np.cos(2*np.pi*x + x**2)*(2*np.pi + 2*x)
# Do the comparison:
x = np.linspace(0,1,1000)
f_grad = egrad(f)
computed = f_grad(x)
analytic = f_grad_analytic(x)
plt.title('Derivative computed from Autograd compared with the analytical derivative')
plt.plot(x,computed,label='autograd')
plt.plot(x,analytic,label='analytic')
plt.xlabel('x')
plt.ylabel('y')
plt.legend()
plt.show()
print("The max absolute difference is: %g"%(np.max(np.abs(computed - analytic))))
Here we experiment with what kind of functions Autograd is capable of finding the gradient of. The following Python functions are just meant to illustrate what Autograd can do, but please feel free to experiment with other, possibly more complicated, functions as well.
import autograd.numpy as np
from autograd import grad
def f1(x):
return x**3 + 1
f1_grad = grad(f1)
# Remember to send in float as argument to the computed gradient from Autograd!
a = 1.0
# See the evaluated gradient at a using autograd:
print("The gradient of f1 evaluated at a = %g using autograd is: %g"%(a,f1_grad(a)))
# Compare with the analytical derivative, that is f1'(x) = 3*x**2
grad_analytical = 3*a**2
print("The gradient of f1 evaluated at a = %g by finding the analytic expression is: %g"%(a,grad_analytical))
To differentiate with respect to two (or more) arguments of a Python function, Autograd need to know at which variable the function if being differentiated with respect to.
import autograd.numpy as np
from autograd import grad
def f2(x1,x2):
return 3*x1**3 + x2*(x1 - 5) + 1
# By sending the argument 0, Autograd will compute the derivative w.r.t the first variable, in this case x1
f2_grad_x1 = grad(f2,0)
# ... and differentiate w.r.t x2 by sending 1 as an additional arugment to grad
f2_grad_x2 = grad(f2,1)
x1 = 1.0
x2 = 3.0
print("Evaluating at x1 = %g, x2 = %g"%(x1,x2))
print("-"*30)
# Compare with the analytical derivatives:
# Derivative of f2 w.r.t x1 is: 9*x1**2 + x2:
f2_grad_x1_analytical = 9*x1**2 + x2
# Derivative of f2 w.r.t x2 is: x1 - 5:
f2_grad_x2_analytical = x1 - 5
# See the evaluated derivations:
print("The derivative of f2 w.r.t x1: %g"%( f2_grad_x1(x1,x2) ))
print("The analytical derivative of f2 w.r.t x1: %g"%( f2_grad_x1(x1,x2) ))
print()
print("The derivative of f2 w.r.t x2: %g"%( f2_grad_x2(x1,x2) ))
print("The analytical derivative of f2 w.r.t x2: %g"%( f2_grad_x2(x1,x2) ))
Note that the grad function will not produce the true gradient of the function. The true gradient of a function with two or more variables will produce a vector, where each element is the function differentiated w.r.t a variable.
import autograd.numpy as np
from autograd import grad
def f3(x): # Assumes x is an array of length 5 or higher
return 2*x[0] + 3*x[1] + 5*x[2] + 7*x[3] + 11*x[4]**2
f3_grad = grad(f3)
x = np.linspace(0,4,5)
# Print the computed gradient:
print("The computed gradient of f3 is: ", f3_grad(x))
# The analytical gradient is: (2, 3, 5, 7, 22*x[4])
f3_grad_analytical = np.array([2, 3, 5, 7, 22*x[4]])
# Print the analytical gradient:
print("The analytical gradient of f3 is: ", f3_grad_analytical)
Note that in this case, when sending an array as input argument, the output from Autograd is another array. This is the true gradient of the function, as opposed to the function in the previous example. By using arrays to represent the variables, the output from Autograd might be easier to work with, as the output is closer to what one could expect form a gradient-evaluting function.
import autograd.numpy as np
from autograd import grad
def f4(x):
return np.sqrt(1+x**2) + np.exp(x) + np.sin(2*np.pi*x)
f4_grad = grad(f4)
x = 2.7
# Print the computed derivative:
print("The computed derivative of f4 at x = %g is: %g"%(x,f4_grad(x)))
# The analytical derivative is: x/sqrt(1 + x**2) + exp(x) + cos(2*pi*x)*2*pi
f4_grad_analytical = x/np.sqrt(1 + x**2) + np.exp(x) + np.cos(2*np.pi*x)*2*np.pi
# Print the analytical gradient:
print("The analytical gradient of f4 at x = %g is: %g"%(x,f4_grad_analytical))
import autograd.numpy as np
from autograd import grad
def f5(x):
if x >= 0:
return x**2
else:
return -3*x + 1
f5_grad = grad(f5)
x = 2.7
# Print the computed derivative:
print("The computed derivative of f5 at x = %g is: %g"%(x,f5_grad(x)))
import autograd.numpy as np
from autograd import grad
def f6_for(x):
val = 0
for i in range(10):
val = val + x**i
return val
def f6_while(x):
val = 0
i = 0
while i < 10:
val = val + x**i
i = i + 1
return val
f6_for_grad = grad(f6_for)
f6_while_grad = grad(f6_while)
x = 0.5
# Print the computed derivaties of f6_for and f6_while
print("The computed derivative of f6_for at x = %g is: %g"%(x,f6_for_grad(x)))
print("The computed derivative of f6_while at x = %g is: %g"%(x,f6_while_grad(x)))
import autograd.numpy as np
from autograd import grad
# Both of the functions are implementation of the sum: sum(x**i) for i = 0, ..., 9
# The analytical derivative is: sum(i*x**(i-1))
f6_grad_analytical = 0
for i in range(10):
f6_grad_analytical += i*x**(i-1)
print("The analytical derivative of f6 at x = %g is: %g"%(x,f6_grad_analytical))
import autograd.numpy as np
from autograd import grad
def f7(n): # Assume that n is an integer
if n == 1 or n == 0:
return 1
else:
return n*f7(n-1)
f7_grad = grad(f7)
n = 2.0
print("The computed derivative of f7 at n = %d is: %g"%(n,f7_grad(n)))
# The function f7 is an implementation of the factorial of n.
# By using the product rule, one can find that the derivative is:
f7_grad_analytical = 0
for i in range(int(n)-1):
tmp = 1
for k in range(int(n)-1):
if k != i:
tmp *= (n - k)
f7_grad_analytical += tmp
print("The analytical derivative of f7 at n = %d is: %g"%(n,f7_grad_analytical))
Note that if n is equal to zero or one, Autograd will give an error message. This message appears when the output is independent on input.
Autograd supports many features. However, there are some functions that is not supported (yet) by Autograd.
Assigning a value to the variable being differentiated with respect to
"""
import autograd.numpy as np
from autograd import grad
def f8(x): # Assume x is an array
x[2] = 3
return x*2
f8_grad = grad(f8)
x = 8.4
print("The derivative of f8 is:",f8_grad(x))
"""
Here, Autograd tells us that an ‘ArrayBox’ does not support item assignment. The item assignment is done when the program tries to assign x[2] to the value 3. However, Autograd has implemented the computation of the derivative such that this assignment is not possible.
import autograd.numpy as np
from autograd import grad
def f9(a): # Assume a is an array with 2 elements
b = np.array([1.0,2.0])
return a.dot(b)
f9_grad = grad(f9)
x = np.array([1.0,0.0])
print("The derivative of f9 is:",f9_grad(x))
Here we are told that the ‘dot’ function does not belong to Autograd’s version of a Numpy array. To overcome this, an alternative syntax which also computed the dot product can be used:
import autograd.numpy as np
from autograd import grad
def f9_alternative(x): # Assume a is an array with 2 elements
b = np.array([1.0,2.0])
return np.dot(x,b) # The same as x_1*b_1 + x_2*b_2
f9_alternative_grad = grad(f9_alternative)
x = np.array([3.0,0.0])
print("The gradient of f9 is:",f9_alternative_grad(x))
# The analytical gradient of the dot product of vectors x and b with two elements (x_1,x_2) and (b_1, b_2) respectively
# w.r.t x is (b_1, b_2).
The documentation recommends to avoid inplace operations such as
a += b
a -= b
a*= b
a /=b
7.11. Replace or not#
In the above code, we have use replacement in setting up the mini-batches. The discussion here may be useful.
7.12. Using Autograd#
We conclude the part on optmization by showing how we can make codes for linear regression and logistic regression using autograd. The first example shows results with ordinary leats squares.
# Using Autograd to calculate gradients for OLS
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
def CostOLS(beta):
return (1.0/n)*np.sum((y-X @ beta)**2)
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
theta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Hessian matrix
H = (2.0/n)* XT_X
EigValues, EigVectors = np.linalg.eig(H)
print(f"Eigenvalues of Hessian Matrix:{EigValues}")
theta = np.random.randn(2,1)
eta = 1.0/np.max(EigValues)
Niterations = 1000
# define the gradient
training_gradient = grad(CostOLS)
for iter in range(Niterations):
gradients = training_gradient(theta)
theta -= eta*gradients
print("theta from own gd")
print(theta)
xnew = np.array([[0],[2]])
Xnew = np.c_[np.ones((2,1)), xnew]
ypredict = Xnew.dot(theta)
ypredict2 = Xnew.dot(theta_linreg)
plt.plot(xnew, ypredict, "r-")
plt.plot(xnew, ypredict2, "b-")
plt.plot(x, y ,'ro')
plt.axis([0,2.0,0, 15.0])
plt.xlabel(r'$x$')
plt.ylabel(r'$y$')
plt.title(r'Random numbers ')
plt.show()
7.13. Same code but now with momentum gradient descent#
# Using Autograd to calculate gradients for OLS
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
def CostOLS(beta):
return (1.0/n)*np.sum((y-X @ beta)**2)
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x#+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
theta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Hessian matrix
H = (2.0/n)* XT_X
EigValues, EigVectors = np.linalg.eig(H)
print(f"Eigenvalues of Hessian Matrix:{EigValues}")
theta = np.random.randn(2,1)
eta = 1.0/np.max(EigValues)
Niterations = 30
# define the gradient
training_gradient = grad(CostOLS)
for iter in range(Niterations):
gradients = training_gradient(theta)
theta -= eta*gradients
print(iter,gradients[0],gradients[1])
print("theta from own gd")
print(theta)
# Now improve with momentum gradient descent
change = 0.0
delta_momentum = 0.3
for iter in range(Niterations):
# calculate gradient
gradients = training_gradient(theta)
# calculate update
new_change = eta*gradients+delta_momentum*change
# take a step
theta -= new_change
# save the change
change = new_change
print(iter,gradients[0],gradients[1])
print("theta from own gd wth momentum")
print(theta)
We note indeed a considerable increase in efficiency here, we less iterations needed. However, if we can invert the Hessian matrix, this is the preferred approach, as shown in the example here.
# Using Newton's method
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
def CostOLS(beta):
return (1.0/n)*np.sum((y-X @ beta)**2)
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
beta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(beta_linreg)
# Hessian matrix
H = (2.0/n)* XT_X
# Note that here the Hessian does not depend on the parameters beta
invH = np.linalg.pinv(H)
EigValues, EigVectors = np.linalg.eig(H)
print(f"Eigenvalues of Hessian Matrix:{EigValues}")
beta = np.random.randn(2,1)
Niterations = 5
# define the gradient
training_gradient = grad(CostOLS)
for iter in range(Niterations):
gradients = training_gradient(beta)
beta -= invH @ gradients
print(iter,gradients[0],gradients[1])
print("beta from own Newton code")
print(beta)
7.14. Including Stochastic Gradient Descent with Autograd#
In this code we include the stochastic gradient descent approach discussed above. Note here that we specify which argument we are taking the derivative with respect to when using autograd.
# Using Autograd to calculate gradients using SGD
# OLS example
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
# Note change from previous example
def CostOLS(y,X,theta):
return np.sum((y-X @ theta)**2)
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
theta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Hessian matrix
H = (2.0/n)* XT_X
EigValues, EigVectors = np.linalg.eig(H)
print(f"Eigenvalues of Hessian Matrix:{EigValues}")
theta = np.random.randn(2,1)
eta = 1.0/np.max(EigValues)
Niterations = 1000
# Note that we request the derivative wrt third argument (theta, 2 here)
training_gradient = grad(CostOLS,2)
for iter in range(Niterations):
gradients = (1.0/n)*training_gradient(y, X, theta)
theta -= eta*gradients
print("theta from own gd")
print(theta)
xnew = np.array([[0],[2]])
Xnew = np.c_[np.ones((2,1)), xnew]
ypredict = Xnew.dot(theta)
ypredict2 = Xnew.dot(theta_linreg)
plt.plot(xnew, ypredict, "r-")
plt.plot(xnew, ypredict2, "b-")
plt.plot(x, y ,'ro')
plt.axis([0,2.0,0, 15.0])
plt.xlabel(r'$x$')
plt.ylabel(r'$y$')
plt.title(r'Random numbers ')
plt.show()
n_epochs = 50
M = 5 #size of each minibatch
m = int(n/M) #number of minibatches
t0, t1 = 5, 50
def learning_schedule(t):
return t0/(t+t1)
theta = np.random.randn(2,1)
for epoch in range(n_epochs):
# Can you figure out a better way of setting up the contributions to each batch?
for i in range(m):
random_index = M*np.random.randint(m)
xi = X[random_index:random_index+M]
yi = y[random_index:random_index+M]
gradients = (1.0/M)*training_gradient(yi, xi, theta)
eta = learning_schedule(epoch*m+i)
theta = theta - eta*gradients
print("theta from own sdg")
print(theta)
Here we include momentum in the standard gradient descent approach.
# Using Autograd to calculate gradients using SGD
# OLS example
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
# Note change from previous example
def CostOLS(y,X,theta):
return np.sum((y-X @ theta)**2)
n = 100
x = 2*np.random.rand(n,1)
y = 4+3*x+np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x]
XT_X = X.T @ X
theta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Hessian matrix
H = (2.0/n)* XT_X
EigValues, EigVectors = np.linalg.eig(H)
print(f"Eigenvalues of Hessian Matrix:{EigValues}")
theta = np.random.randn(2,1)
eta = 1.0/np.max(EigValues)
Niterations = 100
# Note that we request the derivative wrt third argument (theta, 2 here)
training_gradient = grad(CostOLS,2)
for iter in range(Niterations):
gradients = (1.0/n)*training_gradient(y, X, theta)
theta -= eta*gradients
print("theta from own gd")
print(theta)
n_epochs = 50
M = 5 #size of each minibatch
m = int(n/M) #number of minibatches
t0, t1 = 5, 50
def learning_schedule(t):
return t0/(t+t1)
theta = np.random.randn(2,1)
change = 0.0
delta_momentum = 0.3
for epoch in range(n_epochs):
for i in range(m):
random_index = M*np.random.randint(m)
xi = X[random_index:random_index+M]
yi = y[random_index:random_index+M]
gradients = (1.0/M)*training_gradient(yi, xi, theta)
eta = learning_schedule(epoch*m+i)
# calculate update
new_change = eta*gradients+delta_momentum*change
# take a step
theta -= new_change
# save the change
change = new_change
print("theta from own sdg with momentum")
print(theta)
7.14.1. Similar (second order function now) problem but now with AdaGrad#
# Using Autograd to calculate gradients using AdaGrad and Stochastic Gradient descent
# OLS example
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
# Note change from previous example
def CostOLS(y,X,theta):
return np.sum((y-X @ theta)**2)
n = 10000
x = np.random.rand(n,1)
y = 2.0+3*x +4*x*x# +np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x, x*x]
XT_X = X.T @ X
theta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Note that we request the derivative wrt third argument (theta, 2 here)
training_gradient = grad(CostOLS,2)
# Define parameters for Stochastic Gradient Descent
n_epochs = 50
M = 5 #size of each minibatch
m = int(n/M) #number of minibatches
# Guess for unknown parameters theta
theta = np.random.randn(3,1)
# Value for learning rate
eta = 0.01
# Including AdaGrad parameter to avoid possible division by zero
delta = 1e-8
for epoch in range(n_epochs):
# The outer product is calculated from scratch for each epoch
Giter = np.zeros(shape=(3,3))
for i in range(m):
random_index = M*np.random.randint(m)
xi = X[random_index:random_index+M]
yi = y[random_index:random_index+M]
gradients = (1.0/M)*training_gradient(yi, xi, theta)
# Calculate the outer product of the gradients
Giter +=gradients @ gradients.T
# Simpler algorithm with only diagonal elements
Ginverse = np.c_[eta/(delta+np.sqrt(np.diagonal(Giter)))]
# compute update
update = np.multiply(Ginverse,gradients)
theta -= update
print("theta from own AdaGrad")
print(theta)
Running this code we note an almost perfect agreement with the results from matrix inversion.
Similarly, here is our implementation of RMSprop.
# Using Autograd to calculate gradients using RMSprop and Stochastic Gradient descent
# OLS example
from random import random, seed
import numpy as np
import autograd.numpy as np
import matplotlib.pyplot as plt
from autograd import grad
# Note change from previous example
def CostOLS(y,X,theta):
return np.sum((y-X @ theta)**2)
n = 10000
x = np.random.rand(n,1)
y = 2.0+3*x +4*x*x# +np.random.randn(n,1)
X = np.c_[np.ones((n,1)), x, x*x]
XT_X = X.T @ X
theta_linreg = np.linalg.pinv(XT_X) @ (X.T @ y)
print("Own inversion")
print(theta_linreg)
# Note that we request the derivative wrt third argument (theta, 2 here)
training_gradient = grad(CostOLS,2)
# Define parameters for Stochastic Gradient Descent
n_epochs = 50
M = 5 #size of each minibatch
m = int(n/M) #number of minibatches
# Guess for unknown parameters theta
theta = np.random.randn(3,1)
# Value for learning rate
eta = 0.01
# Value for parameter rho
rho = 0.99
# Including AdaGrad parameter to avoid possible division by zero
delta = 1e-8
for epoch in range(n_epochs):
Giter = np.zeros(shape=(3,3))
for i in range(m):
random_index = M*np.random.randint(m)
xi = X[random_index:random_index+M]
yi = y[random_index:random_index+M]
gradients = (1.0/M)*training_gradient(yi, xi, theta)
# Previous value for the outer product of gradients
Previous = Giter
# Accumulated gradient
Giter +=gradients @ gradients.T
# Scaling with rho the new and the previous results
Gnew = (rho*Previous+(1-rho)*Giter)
# Taking the diagonal only and inverting
Ginverse = np.c_[eta/(delta+np.sqrt(np.diagonal(Gnew)))]
# Hadamard product
update = np.multiply(Ginverse,gradients)
theta -= update
print("theta from own RMSprop")
print(theta)
7.15. Introducing JAX#
Presently, instead of using autograd, we recommend using JAX
JAX is Autograd and XLA (Accelerated Linear Algebra)), brought together for high-performance numerical computing and machine learning research. It provides composable transformations of Python+NumPy programs: differentiate, vectorize, parallelize, Just-In-Time compile to GPU/TPU, and more.
Here’s a simple example on how you can use JAX to compute the derivate of the logistic function.
import jax.numpy as jnp
from jax import grad, jit, vmap
def sum_logistic(x):
return jnp.sum(1.0 / (1.0 + jnp.exp(-x)))
x_small = jnp.arange(3.)
derivative_fn = grad(sum_logistic)
print(derivative_fn(x_small))